This is a good safety feature and explanation of the system. The 2 sensors working together is the only way to use the paddlewheel.
From this write up:
1) GPS only has safety featured so the boat doesn't run away in cruise
2) Paddlewheel backup is just that - backs up the GPS if signal is lost
3) The system is not designed to switch dominate input from each other.
Supra is capable of this and with the added cost to add the backup sensor in the Moomba the copy paste code should be included. Just saying SC dropped the ball here and could easily fix with a software update to include "River Mode".
I only have the paddlewheel and thought about updating to GPS but won't for this exact reason. Yes cruise will surge going over waves but adjusting for current while surfing would be a hassle. My wife would not drive for me if that was the case.